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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21151477_21162119_F

Intron Information:

Intron Rank:
123672
Intron Class:
major
Intron Phase:
Intron Coordinates:
21151477 - 21162119
Intron Length:
10643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
77.9
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
88.3
0.86
0.8
82
34.8
Minor 5ss
39.5
-1.2
3.2
55.8
48.4
Minor BPS
59
0.27
1.7
70.36
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016685
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029841
21098339 - 21163003
64665