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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21196790_21197122_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21196790 - 21197122
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
ATGGCACATCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
GTGACCAAAACA
Flanking Amino Acid:
AEGEHGAQRLREVPAPLGQP
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
66.9
38.5
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
59.9
0.22
1.1
48.8
43.8
Minor 5ss
26.9
-2.7
3.5
39.6
45.9
Minor BPS
48.3
-0.1
2
62.04
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028485
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033923
21196731 - 21202233
5503