Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21197981_21198575_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21197981 - 21198575

Intron Length:

595

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCACCG

5'SS Class:

major

3'SS Sequence:

CACCTCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACACAC

U12 Branch Point Sequence:

GATGCTGCACCT

Flanking Amino Acid:

MQHYQEVIGKGQKDEAVQTE

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.6

0.35

1.3

51.1

45.8

Major BPS

49.1

-0

0.9

56.3

29.4

Major PPT

71.1

0.47

0.8

64.9

30.2

Minor 5ss

36.8

-1.5

3.2

49.2

46.5

Minor BPS

39.7

-0.7

2.3

57.58

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033923

21196731 - 21202233

5503