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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21200676_21200753_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21200676 - 21200753
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAT
U12 Branch Point Sequence:
ATGTCTCCCACT
Flanking Amino Acid:
QEAQEQSKQQAHSLQQRLQE
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
67.4
0.43
1.2
69
38.9
Major PPT
71.3
0.48
0.8
64.7
30.9
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
44.8
-0.3
2.2
67.12
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028485
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033923
21196731 - 21202233
5503