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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21201093_21201400_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21201093 - 21201400
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCCAC
U12 Branch Point Sequence:
TCACCCACAGCA
Flanking Amino Acid:
QANAGGSCGSVVTLRTSHTL
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
60.4
44.5
Major BPS
46.9
-0.1
1.1
53.7
32.6
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
42.6
-0.8
2.9
62.1
42.4
Minor BPS
44
-0.4
2
55.55
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028485
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033923
21196731 - 21202233
5503