About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21201511_21201594_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21201511 - 21201594
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACCTCATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACTCACTCAACT
Flanking Amino Acid:
VNISQRAKEQMQSSEKRGQK
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.2
0.61
0.9
73.4
35.4
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
56.3
0.28
1.8
73.68
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028485
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033923
21196731 - 21202233
5503