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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21203068_21203455_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21203068 - 21203455
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CCTTCTTTCACT
Flanking Amino Acid:
VYHELVMTTKEYMQCVTAVD
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.1
40.4
Major BPS
77.7
0.69
1
81
30.2
Major PPT
83.7
0.76
0.8
78.3
28.9
Minor 5ss
46.8
-0.3
2.9
64.1
47.4
Minor BPS
65.7
0.57
1.8
78.9
44

Associated Gene:

Gene:
DHX38
Ensembl Gene ID:
ENSAPLG00000015279
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015971
21202372 - 21212055
9684