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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21205034_21205151_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21205034 - 21205151
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAG
U12 Branch Point Sequence:
CCTTGCTTCAGT
Flanking Amino Acid:
VIDSGYCKLKVFNPRIGMDA
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
48.3
-0.1
1.7
59.3
47.1
Major PPT
77.2
0.61
0.9
70.4
36.3
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
46.5
-0.2
2.4
66.67
50

Associated Gene:

Gene:
DHX38
Ensembl Gene ID:
ENSAPLG00000015279
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015971
21202372 - 21212055
9684