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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21205616_21205694_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21205616 - 21205694
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGTTTCAATC
Flanking Amino Acid:
VFMPGQEDIEVTSEQIVEHL
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.7
0.58
0.9
69.2
41.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
57.7
0.22
1.6
69.41
36.9

Associated Gene:

Gene:
DHX38
Ensembl Gene ID:
ENSAPLG00000015279
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015971
21202372 - 21212055
9684