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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21205806_21205979_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21205806 - 21205979
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GTGTCTGTAATT
Flanking Amino Acid:
TFPVDILFSKTPQEDYVEAA
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
80.2
0.68
0.9
76.9
37.3
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
58.2
0.33
2
76
41.5

Associated Gene:

Gene:
DHX38
Ensembl Gene ID:
ENSAPLG00000015279
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015971
21202372 - 21212055
9684