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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21210978_21211135_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21210978 - 21211135
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TTTCCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CTGATCGTACTT
Flanking Amino Acid:
DRNHDRKRDREERDRSHHSS
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
70.2
40.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
85.6
0.8
0.7
77.5
31.2
Minor 5ss
42.4
-0.8
3.6
65.6
45.5
Minor BPS
43
-0.4
2.2
59.08
45.1

Associated Gene:

Gene:
DHX38
Ensembl Gene ID:
ENSAPLG00000015279
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015971
21202372 - 21212055
9684