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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21223401_21224082_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21223401 - 21224082
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGCG
5'SS Class:
major
3'SS Sequence:
GTTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTGTGTTTATTT
Flanking Amino Acid:
VLELAKNSASEHLRVILHSY
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
58
39.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.6
0.8
0.8
77.1
41.6
Minor 5ss
36.9
-1.5
3.3
48.3
47.3
Minor BPS
49.1
0.01
2
67.82
43.9

Associated Gene:

Gene:
ZNF821
Ensembl Gene ID:
ENSAPLG00000015041
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034885
21220210 - 21231716
11507