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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21230355_21231061_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21230355 - 21231061
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGGTC
5'SS Class:
major
3'SS Sequence:
TTCTGCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
AAGTCTCTGACA
Flanking Amino Acid:
ARFTSHATFNSEKLPEVLSA
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
74.9
35.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
85
0.79
0.8
76.7
37.5
Minor 5ss
29.2
-2.4
3.5
41.1
45.5
Minor BPS
53
0.09
1.6
62.05
37.9

Associated Gene:

Gene:
ZNF821
Ensembl Gene ID:
ENSAPLG00000015041
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034885
21220210 - 21231716
11507
ENSAPLT00000026898
21215104 - 21231990
16887
ENSAPLT00000015700
21220210 - 21231990
11781