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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_212326_213593_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
212326 - 213593
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATGTATTTAAAC
Flanking Amino Acid:
KQCKESFHYKSQLRNHEREQ
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87.4
0.84
0.8
85.1
34.9
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
59
0.26
1.6
67.04
38.2

Associated Gene:

Gene:
ZNF507
Ensembl Gene ID:
ENSAPLG00000013158
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044053
201034 - 219415
18382
ENSAPLT00000026776
201034 - 219415
18382
ENSAPLT00000013700
201034 - 219415
18382