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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21259711_21262550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21259711 - 21262550
Intron Length:
2840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
VHLLMTNCIKNDLNHSTQYV
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
75.9
33.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.1
0.81
0.7
80.2
25.3
Minor 5ss
34.5
-1.8
3.7
46.6
43.4
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
AP1G1
Ensembl Gene ID:
ENSAPLG00000014217
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032019
21244921 - 21287246
42326
ENSAPLT00000031037
21244921 - 21283471
38551
ENSAPLT00000018459
21244921 - 21287246
42326
ENSAPLT00000014910
21253681 - 21287246
33566