About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21264696_21268524_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21264696 - 21268524
Intron Length:
3829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTCTGACAACT
Flanking Amino Acid:
SPDMLAHFRKLVPQLVRILK
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
89
0.88
0.6
88.1
21.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
45.5
-0.2
2.4
74.5
42

Associated Gene:

Gene:
AP1G1
Ensembl Gene ID:
ENSAPLG00000014217
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031037
21244921 - 21283471
38551
ENSAPLT00000018459
21244921 - 21287246
42326
ENSAPLT00000014910
21253681 - 21287246
33566
ENSAPLT00000032019
21244921 - 21287246
42326