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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21269196_21269442_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21269196 - 21269442
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
SEAMNDILAQVATNTETSKN
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
81.4
35
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
AP1G1
Ensembl Gene ID:
ENSAPLG00000014217
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014910
21253681 - 21287246
33566
ENSAPLT00000032019
21244921 - 21287246
42326
ENSAPLT00000031037
21244921 - 21283471
38551
ENSAPLT00000018459
21244921 - 21287246
42326