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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21274552_21275172_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21274552 - 21275172
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGGGGT
5'SS Class:
major
3'SS Sequence:
CTAATTTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTTTTCTAATT
Flanking Amino Acid:
CASGIFLAAEKYAPSKRWHI
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1
63.2
41.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73.1
0.52
1
72.9
41.9
Minor 5ss
38.7
-1.3
3.6
54.7
44.3
Minor BPS
62.3
0.46
1.6
79.49
37.4

Associated Gene:

Gene:
AP1G1
Ensembl Gene ID:
ENSAPLG00000014217
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018459
21244921 - 21287246
42326
ENSAPLT00000014910
21253681 - 21287246
33566
ENSAPLT00000032019
21244921 - 21287246
42326
ENSAPLT00000031037
21244921 - 21283471
38551