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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21276943_21277254_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21276943 - 21277254
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCC
5'SS Class:
major
3'SS Sequence:
TTTCTTCCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTCTTCCAACA
Flanking Amino Acid:
YKAILGDYSQQPLVQVASWC
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.3
38.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.5
0.71
0.8
78
29.4
Minor 5ss
33.3
-1.9
3
43.9
43.3
Minor BPS
49.8
-0
1.8
69.52
36.5

Associated Gene:

Gene:
AP1G1
Ensembl Gene ID:
ENSAPLG00000014217
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018459
21244921 - 21287246
42326
ENSAPLT00000014910
21253681 - 21287246
33566
ENSAPLT00000032019
21244921 - 21287246
42326
ENSAPLT00000031037
21244921 - 21283471
38551