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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21278717_21280914_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21278717 - 21280914
Intron Length:
2198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CAGCTTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACTAT
U12 Branch Point Sequence:
CACAGTGTAACT
Flanking Amino Acid:
NALFKKYDHMRPALLERMPV
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
54.3
0.11
1.3
53.1
42.3
Major PPT
76.7
0.6
0.9
73.1
36.9
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
42.3
-0.5
2.3
56.82
46

Associated Gene:

Gene:
AP1G1
Ensembl Gene ID:
ENSAPLG00000014217
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014910
21253681 - 21287246
33566
ENSAPLT00000032019
21244921 - 21287246
42326
ENSAPLT00000031037
21244921 - 21283471
38551
ENSAPLT00000018459
21244921 - 21287246
42326