Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21286099_21286847_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21286099 - 21286847

Intron Length:

749

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGGCTC

5'SS Class:

major

3'SS Sequence:

TTCTTTCCATCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

TACACTTGAATT

Flanking Amino Acid:

EVNNFPPQSWHGCNHADSQS

Intron Amino Acid Position:

818

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.1

41.2

Major BPS

58.9

0.22

49.8

35.1

Major PPT

82.1

0.72

0.8

82.4

Minor 5ss

32.1

-2

3.5

47.4

42.4

Minor BPS

58.2

0.34

1.5

70.65

40.5

Associated Gene:

Gene:

AP1G1

Ensembl Gene ID:

ENSAPLG00000014217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018459

21244921 - 21287246

42326