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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21300224_21302807_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21300224 - 21302807
Intron Length:
2584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
GTAAACACAAAT
Flanking Amino Acid:
DLSCMIRFYSEKPSQVEQLD
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
89.4
0.89
0.6
88
21.9
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
41.7
-0.5
2
59.15
42.4

Associated Gene:

Gene:
PHLPP2
Ensembl Gene ID:
ENSAPLG00000013635
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014264
21291251 - 21320758
29508