About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21302999_21303417_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21302999 - 21303417
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTTATCATTT
Flanking Amino Acid:
MHILPLVGGKVEEMKRRQYT
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
75.5
40.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
85.6
0.8
0.7
80.2
25
Minor 5ss
33.7
-1.9
3.2
48.4
47.1
Minor BPS
46.8
-0.1
2
68.75
42.6

Associated Gene:

Gene:
PHLPP2
Ensembl Gene ID:
ENSAPLG00000013635
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014264
21291251 - 21320758
29508