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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21309696_21310173_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21309696 - 21310173
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTACGTCTG
5'SS Class:
major
3'SS Sequence:
TTTACTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTGCTTTACTT
Flanking Amino Acid:
SLRALYANNNCLTSVNVYPV
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.2
57.1
47.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
87.3
0.84
0.7
85.3
29.3
Minor 5ss
39.7
-1.2
3.3
59.5
44.9
Minor BPS
65.3
0.56
1.7
82.98
39.3

Associated Gene:

Gene:
PHLPP2
Ensembl Gene ID:
ENSAPLG00000013635
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014264
21291251 - 21320758
29508