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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21313517_21315052_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21313517 - 21315052
Intron Length:
1536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAGAT
U12 Branch Point Sequence:
TTGGCCTAAAAG
Flanking Amino Acid:
ANNNLQAFPASKLSKLEHLE
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
50.8
0.02
1.1
47.1
36.1
Major PPT
84.9
0.78
0.8
81.6
30.4
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
51
-0.1
2
60.18
47.4

Associated Gene:

Gene:
PHLPP2
Ensembl Gene ID:
ENSAPLG00000013635
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014264
21291251 - 21320758
29508