Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21315216_21315741_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

21315216 - 21315741

Intron Length:

526

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTCTTA

5'SS Class:

weak_major

3'SS Sequence:

TTTGATACTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTTTTTGATA

Flanking Amino Acid:

PEILHLPHIQIVDLSCNELT

Intron Amino Acid Position:

596

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

1.1

69.5

37.4

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

77.6

0.62

0.9

39.3

Minor 5ss

62.6

0.42

2.2

73.5

43.1

Minor BPS

74.5

0.76

81.02

27.4

Associated Gene:

Gene:

PHLPP2

Ensembl Gene ID:

ENSAPLG00000013635

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014264

21291251 - 21320758

29508