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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21315873_21316249_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21315873 - 21316249
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTGAT
U12 Branch Point Sequence:
GCATCTAGAAGT
Flanking Amino Acid:
VLEHKTLDIFSHITTLKIDA
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
64.7
0.36
1.2
55.1
42.1
Major PPT
77.2
0.61
0.7
73.3
24.9
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
44.5
-0.3
1.9
59.33
43.6

Associated Gene:

Gene:
PHLPP2
Ensembl Gene ID:
ENSAPLG00000013635
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014264
21291251 - 21320758
29508