About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21316361_21316817_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21316361 - 21316817
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATCAG
U12 Branch Point Sequence:
GGTTTTCTAACA
Flanking Amino Acid:
GIAEMAGQRNKLCVSTLAMG
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
46.2
-0.2
1.6
51.5
43.9
Major PPT
75
0.56
1
70
40.3
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
58.9
0.28
1.7
69.25
36.7

Associated Gene:

Gene:
PHLPP2
Ensembl Gene ID:
ENSAPLG00000013635
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014264
21291251 - 21320758
29508