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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21317007_21317139_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21317007 - 21317139
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
TCTCCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCTCCTCCAACA
Flanking Amino Acid:
FMSNTFLVSHRKLGMAGQKL
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
74.5
0.55
0.8
69.8
29.5
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
49.6
-0
1.9
65.86
40.4

Associated Gene:

Gene:
PHLPP2
Ensembl Gene ID:
ENSAPLG00000013635
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014264
21291251 - 21320758
29508