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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21317372_21318618_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21317372 - 21318618
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTTTA
5'SS Class:
major
3'SS Sequence:
CTCTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATGTTACT
Flanking Amino Acid:
IKEQKAIITEDNKVNGVTCC
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.2
35.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.9
0.72
0.8
76.3
32.3
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
42.9
-0.4
2.4
65.31
45.1

Associated Gene:

Gene:
PHLPP2
Ensembl Gene ID:
ENSAPLG00000013635
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014264
21291251 - 21320758
29508