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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21336299_21336511_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21336299 - 21336511
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAATC
Flanking Amino Acid:
PKKAMISLSLGDPTVFGNLP
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
55.1
0.12
1.2
57
41.7
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
63.2
0.39
1.4
71.11
34.2

Associated Gene:

Gene:
TAT
Ensembl Gene ID:
ENSAPLG00000013354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020695
21336056 - 21343493
7438
ENSAPLT00000013910
21336056 - 21343493
7438