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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21336617_21337453_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21336617 - 21337453
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
GCCTTCCTACCA
Flanking Amino Acid:
GRYNGYAPSVGYQSCREAVA
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
46.7
-0.2
1.9
55.78
43.5

Associated Gene:

Gene:
TAT
Ensembl Gene ID:
ENSAPLG00000013354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020695
21336056 - 21343493
7438
ENSAPLT00000013910
21336056 - 21343493
7438