Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21338377_21338950_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21338377 - 21338950

Intron Length:

574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACTG

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTCTCGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTGAAT

U12 Branch Point Sequence:

CCAGGCTGAATG

Flanking Amino Acid:

SKSHLQKILAVASRQCVPIL

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

71.5

40.2

Major BPS

47.7

-0.1

1.6

57.6

45.8

Major PPT

80.9

0.7

76.1

25.9

Minor 5ss

30.1

-2.3

3.1

38.3

46.6

Minor BPS

42.5

-0.7

40.17

44.3

Associated Gene:

Gene:

TAT

Ensembl Gene ID:

ENSAPLG00000013354

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020695

21336056 - 21343493

7438

ENSAPLT00000013910

21336056 - 21343493

7438