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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21339534_21340363_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21339534 - 21340363
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATCATCATGC
Flanking Amino Acid:
HDRRDIFGNEIRDGLLRLSQ
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
80.7
0.69
0.9
77.7
36.1
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
42.6
-0.5
2.2
55.44
42.3

Associated Gene:

Gene:
TAT
Ensembl Gene ID:
ENSAPLG00000013354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020695
21336056 - 21343493
7438
ENSAPLT00000013910
21336056 - 21343493
7438