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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21340643_21340841_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21340643 - 21340841
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAACT
Flanking Amino Acid:
SPAAKAVTQASNADLCYAAL
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
69.9
42.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
32.9
-2
3.4
48.3
47.3
Minor BPS
76.5
0.91
1.3
89.64
34

Associated Gene:

Gene:
TAT
Ensembl Gene ID:
ENSAPLG00000013354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020695
21336056 - 21343493
7438