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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21352838_21355849_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21352838 - 21355849
Intron Length:
3012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGATGCTGAACT
Flanking Amino Acid:
GLVVLQEDMLRSLATMMKSR
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
60.7
0.41
1.9
78.99
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013306
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013848
21352776 - 21356996
4221