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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21362483_21363342_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21362483 - 21363342
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTCTCTTACTT
Flanking Amino Acid:
AANREFESDESESDTSDALE
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
81.3
32.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
79.8
0.67
0.8
77.7
29.9
Minor 5ss
36.8
-1.5
3.5
55
49.2
Minor BPS
67.8
0.64
1.6
84.73
36.1

Associated Gene:

Gene:
TERF2IP
Ensembl Gene ID:
ENSAPLG00000001704
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001697
21362039 - 21364008
1970