About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21364128_21364859_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21364128 - 21364859
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGGTG
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGCAAA
U12 Branch Point Sequence:
TTCTGTTTTACA
Flanking Amino Acid:
VGDVEPRLSKNELKRRLKAE
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
66.7
39
Major BPS
47.9
-0.1
1.3
54.7
39
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
29.1
-2.4
3.6
37.6
41.6
Minor BPS
54.2
0.13
2.1
70.65
41.9

Associated Gene:

Gene:
KARS1
Ensembl Gene ID:
ENSAPLG00000012705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043172
21363244 - 21374061
10818
ENSAPLT00000026162
21363244 - 21374017
10774
ENSAPLT00000020362
21363244 - 21374040
10797