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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21365011_21365240_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21365011 - 21365240
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGAATC
5'SS Class:
major
3'SS Sequence:
TTTCTTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTTGTTACA
Flanking Amino Acid:
GADEENLDPNQYYKIRSHAI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
77.1
31.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.4
0.86
0.8
83.5
31.6
Minor 5ss
35
-1.7
3.1
48.5
40.6
Minor BPS
47.3
-0.2
2.2
67.8
38.6

Associated Gene:

Gene:
KARS1
Ensembl Gene ID:
ENSAPLG00000012705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013266
21364231 - 21374040
9810
ENSAPLT00000043172
21363244 - 21374061
10818
ENSAPLT00000026162
21363244 - 21374017
10774
ENSAPLT00000020362
21363244 - 21374040
10797