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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21365915_21366211_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21365915 - 21366211
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
GVKLQVMANSRLYKSEEEYF
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
81
0.7
0.9
74.2
39.4
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
KARS1
Ensembl Gene ID:
ENSAPLG00000012705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020362
21363244 - 21374040
10797
ENSAPLT00000013266
21364231 - 21374040
9810
ENSAPLT00000043172
21363244 - 21374061
10818
ENSAPLT00000026162
21363244 - 21374017
10774