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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21366399_21366578_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21366399 - 21366578
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAAAA
Flanking Amino Acid:
PHLHFGLKDKETRYRQRYLD
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
90.2
0.9
0.7
88.7
28.3
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
60.1
0.31
1.8
71.86
40.4

Associated Gene:

Gene:
KARS1
Ensembl Gene ID:
ENSAPLG00000012705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043172
21363244 - 21374061
10818
ENSAPLT00000026162
21363244 - 21374017
10774
ENSAPLT00000020362
21363244 - 21374040
10797
ENSAPLT00000013266
21364231 - 21374040
9810