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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21366705_21368486_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21366705 - 21368486
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TACTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ATTTTGTTACTA
Flanking Amino Acid:
SFLDELGFLEIETPMMNIIP
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.3
0.73
0.9
76
37.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
49.6
-0
2.2
68.6
38.6

Associated Gene:

Gene:
KARS1
Ensembl Gene ID:
ENSAPLG00000012705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043172
21363244 - 21374061
10818
ENSAPLT00000020362
21363244 - 21374040
10797
ENSAPLT00000013266
21364231 - 21374040
9810