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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21369653_21369741_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21369653 - 21369741
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACATAT
5'SS Class:
major
3'SS Sequence:
TATACTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CCTTCTATACTC
Flanking Amino Acid:
LMEITEKLLSGMVKHITGSY
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
73.8
33
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
76.2
0.59
0.9
70.4
35.7
Minor 5ss
39.7
-1.2
3.1
55.7
48.5
Minor BPS
47.8
-0.1
1.9
58.11
41.8

Associated Gene:

Gene:
KARS1
Ensembl Gene ID:
ENSAPLG00000012705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043172
21363244 - 21374061
10818
ENSAPLT00000026162
21363244 - 21374017
10774
ENSAPLT00000020362
21363244 - 21374040
10797
ENSAPLT00000013266
21364231 - 21374040
9810