About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21369916_21370692_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21369916 - 21370692
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGATGG
5'SS Class:
major
3'SS Sequence:
ACAACTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGTCTACAACT
Flanking Amino Acid:
FPSAESFETEETRRFFDDLC
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
64.6
42.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
62.6
0.28
1
58.5
42.2
Minor 5ss
33.7
-1.9
2.9
39.7
45.7
Minor BPS
59.7
0.38
1.8
81.2
40.5

Associated Gene:

Gene:
KARS1
Ensembl Gene ID:
ENSAPLG00000012705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043172
21363244 - 21374061
10818
ENSAPLT00000026162
21363244 - 21374017
10774
ENSAPLT00000020362
21363244 - 21374040
10797
ENSAPLT00000013266
21364231 - 21374040
9810