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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21371550_21371791_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21371550 - 21371791
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATTTTAAGG
Flanking Amino Acid:
HPQIMSPLAKWHRTHRGLTE
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
76.9
31.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77
0.61
0.9
73.7
36
Minor 5ss
34.2
-1.8
3.5
44.1
44.7
Minor BPS
60
0.17
1.7
67.12
41.1

Associated Gene:

Gene:
KARS1
Ensembl Gene ID:
ENSAPLG00000012705
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020362
21363244 - 21374040
10797
ENSAPLT00000013266
21364231 - 21374040
9810
ENSAPLT00000043172
21363244 - 21374061
10818
ENSAPLT00000026162
21363244 - 21374017
10774