Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21374838_21375584_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21374838 - 21375584

Intron Length:

747

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCATTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

GTTCATTTAATG

Flanking Amino Acid:

EVAARPGNLQVTKEVVAMGT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

75.5

40.6

Major BPS

100

1.24

0.5

100

Major PPT

91.2

0.93

0.7

89.3

26.1

Minor 5ss

36.6

-1.5

41.4

44.7

Minor BPS

58.4

0.13

1.6

62.64

39.3

Associated Gene:

Gene:

ADAT1

Ensembl Gene ID:

ENSAPLG00000012379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012894

21373552 - 21392314

18763