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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21377886_21378672_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21377886 - 21378672
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTCTGTCTAACA
Flanking Amino Acid:
AETVAKRSFQRYLLHQMCLA
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
67.7
39.3
Major BPS
68
0.45
1
57.8
39
Major PPT
77.6
0.62
0.9
73.3
36
Minor 5ss
25.9
-2.8
2.9
29.3
43.4
Minor BPS
53.7
0.11
2.1
71.45
41.1

Associated Gene:

Gene:
ADAT1
Ensembl Gene ID:
ENSAPLG00000012379
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012894
21373552 - 21392314
18763