Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21378804_21379463_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21378804 - 21379463

Intron Length:

660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTGTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATGTTGCTAATT

Flanking Amino Acid:

IFVFFSSHTPCGDASIIPIS

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

79.9

34.9

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

84.2

0.77

0.8

80.6

31.5

Minor 5ss

36.3

-1.5

2.9

41.7

Minor BPS

47.5

-0.1

2.3

70.21

41.4

Associated Gene:

Gene:

ADAT1

Ensembl Gene ID:

ENSAPLG00000012379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012894

21373552 - 21392314

18763