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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21380080_21382437_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21380080 - 21382437
Intron Length:
2358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GAGACTTTAAAT
Flanking Amino Acid:
QEAMRRAIIERCQHVSFLPD
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.1
0.52
0.9
67.9
38.2
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
58.9
0.36
1.5
68.24
42

Associated Gene:

Gene:
ADAT1
Ensembl Gene ID:
ENSAPLG00000012379
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012894
21373552 - 21392314
18763