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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21382584_21384295_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21382584 - 21384295
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTCTTTTAATA
Flanking Amino Acid:
SKTKLVPCSAAISWSAVPEQ
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.3
30.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.6
0.8
0.7
84.5
23.3
Minor 5ss
33.6
-1.9
2.8
31.7
42.6
Minor BPS
68.8
0.59
1.1
72.9
32.7

Associated Gene:

Gene:
ADAT1
Ensembl Gene ID:
ENSAPLG00000012379
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012894
21373552 - 21392314
18763